Pekka Katajisto, Principal Investigator
I am fascinated by the biology of aging. How and why our stem cells eventually fail to maintain tissue functions and physiological integrity? To me, that simply is the most interesting question - one that also continually spurs new research directions for the lab.
Jenny Bärlund and Maija Simula, Lab Managers, UH
Our main interest is to research and prevent the premature aging of our colleagues by focusing on lab management and taking care of running issues in the Helsinki lab. At present, the relative grayness of the test population is minor.
Tiina Aliranta, Project Coordinator
I take care of the administrative side so that our researchers have more time to do great science. I work on financial and personnel administration, project management, organizing events, grant applications and reporting and any other task my colleagues come up with for me to do.
SENIOR SCIENTISTS
Agustin Sola Carvajal, Research Specialist
Stress is one of the most influencing factors in aging. Removing stress from our PhD students and postdocs and helping them to have a healthy research is my main focus. I am also interested on understanding how the stem cells of the skin behave during aging and development.
Emilia Kuuluvainen, Research Coordinator
I'm interested in how changes in a cell's environment or metabolism affects chromatin and transcription activity to control cell identity. I supervise MSc and co-supervise PhD students, coordinate collaborations and do research on projects related to stem cell metabolism within MetaStem and Katajistolab. My work also includes science communication, organizing seminars and taking part in writing manuscripts, grant applications and reports.
Swetha Gopalakrishnan, University Researcher
I am a developmental biologist turned stem cell biologist. Using skeletal muscle stem cells (satellite cells), I aim to study stem cell dynamics during activation and injury response. Importantly how changes in cellular metabolism influence cell fate decisions in these cells.
POST DOCS
Arun Teotia
Bioengineering applies concepts and principles of engineering and science into medicine and biology. I work to synthesize and evaluate new materials for biomedical applications especially considering concepts of biocompatibility, biodegradability and toxicity. I use technologies such as 3D-additive manufacturing, lithography, self-assembly and controlled release to understand biochemical and biophysical processes and device solutions to monitor and control such processes.
Çise Kizilirmak
I am a molecular biologist trained for systems biology approaches. I did my PhD working on dynamics of a biological oscillator in the context of paracrine inflammatory signalling using live cell imaging as a main tool. I am interested in how cells use signalling molecules to keep each other informed and how far these signals travel in crowded environments. I joined Katajisto Lab to start tackling some of these questions.
Makoto Noguchi
My interest is how stem cells modify tissue regenerative capacity in response to intrinsic/extrinsic metabolic changes, especially in skeletal muscle and small intestine. I want to solve this question by integrating stem cell biology into my background in physiology and biochemistry (like rolling sushi). I ultimately aim to prevent tissue dysfunction with regenerative adaptations initiated by metabolic responses in stem cells.
Nina Peltokangas
I am interested in how cells communicate with each other to collectively shape tissue function. During my PhD I studied developmental hematopoiesis at single cell resolution focusing on interactions with the endothelial niche. Using different stem cell systems, I aim to further explore different modes of cell-cell communication and their perturbance upon aging and disease.
PhD STUDENTS
Alexandra Ritchie
High-quality oocytes are critical for generating healthy offspring. I am studying how organelle function and cell interactions during oocyte development contribute to oocyte quality. I'm also a computer scientist, and aim to develop new tools for simulating cell interactions and stem cell function in silico, as well as new algorithms for automated image analysis.
Daniel Borshagovski
I am interested in how cell-intrinsic changes in aging tissues influence the interactions between stem cells and their niches and how these changes contribute to the deterioration of tissue function in aging animals. I aim to study the molecular features of single cells, with techniques such as single-cell RNA sequencing, to understand the importance of the niche for stem cell function in homeostasis and pathological states
Eliisa Vähäkangas
Mitochondria play a key role in regulating the glucose stimulated insulin release of beta-cells. I am interested to see how mitochondrial age affects differentiation towards the beta cell fate from human pluripotent stem cells and how mitochondrial age affects the function of beta cells. My project lies between the interests of two MetaStem labs, and thus I'm a shared PhD student of the Katajisto and Otonkoski labs.
Ella Salminen
Adult stem cells need to balance self-renewal and differentiation to maintain tissue function. I am interested in how the extracellular matrix guides stem cell fate decisions. I focus on studying the effects of basement membrane composition on regeneration and tumorigenesis in the intestinal epithelium.
Gabija Zumaraite
I'm interested in cellular and molecular changes that occur with aging. Although the characteristics of aged cells are well-documented, the interplay between different hallmarks is poorly understood. I want to uncover which alterations manifest first and how they are influenced by the environment and processes within the cell. I'm also curious if these changes can be effectively identified and targeted to prevent further age-associated changes.
gabija.zumaraite@helsinki.fi
Hien Bui
During asymmetric division, some stem cells asymmetrically organize and divide organelles. I am interested in understanding how this occurs and influences cell fate. In the lab, I am focusing on studying the mechanism that regulate age-selective segregation of peroxisomes during stem cell division.
Johanna Aspholm
Cancer stem cells give rise to differentiated cancer cells and are a likely suspect behind disease remission. I am interested in the heterogeneity of cancer stem cells, which may have implications for both disease progression as well as treatment strategies. My studies focus on identifying possible metabolic differences within the intestinal cancer stem cell population and their effect on tumorigenesis.
Julia Döhla
Stem cell exhaustion is a key contributor to age related tissue demise. My interest is focused on the mechanisms stem cells use to avoid accumulation of damage and to maintain tissue renewal. Understanding how stem cells recognize and rid themselves of damaged cellular material in order to preserve their functionality can give important clues about aging and longevity.
Lucas Porcile
Stem cell proliferation and differentiation potential are tightly coupled to the cellular epigenetic state, which in turn is susceptible to intrinsic metabolic bias. My research interests concern understanding how organelle fitness affects stemness, fate decisions, and organismal aging.
lucas.porcile@ki.se
Martin Sandvik
I’m interested in how skeletal muscle stem cells balance self-renewal and differentiation to enable regeneration throughout an individual’s lifetime. I’m especially keen on studying how organelle dynamics, metabolism, and exercise affect these stem cells, and currently I’m exploring whether peroxisomes, key players in metabolism, participate in cell fate changes. By understanding the basic mechanisms involved, we could understand and improve treatments for age-related loss of muscle mass and function.
Simon Andersson
Intestinal stem cells face the most metabolically varying conditions in the body. My interests lie in how stem cells and their niche cooperate to navigate such rapidly changing metabolic environments, I am particularly interested the role mitochondria play in stem cell function.
Yani Luo
The environment influences stem cell fate. My interest is to understand how the communication between muscle stem cells with their immediate niche regulates fate determination by muscle stem cells during homeostasis, regeneration, and aging.
MSc STUDENTS
Ella Kärkkäinen
I have vast interests in cell biology and metabolism. I find great joy in solving problems with bioinformatics as well. Currently I am working on discovering a specific topic for my bachelor's thesis.
Fanny Nyström
My fascination for stem cells, how they are regulated and what contributes to their exhaustion led me to Katajisto lab. I am interested in how stem cell function and dysfunction affect animal physiology together with the environment.
Rita Santos
Ageing and regeneration are my main scientific interests. I believe that understanding
how the organelles' age affects stem cell capacity can bring a new vision for stem cell engineering and ageing therapies.
Vid Savnik
My interests lie at the interplay of gene expression, nuclear organization, organelle dynamics and cell fate. I find it fascinating how the cell can sense and separate the different classes of organelles (e.g. by age), leading to asymmetric division, and how that results in in altered metabolism, epigenetics and finally cell fate.